Compared to other organisms, plants have evolved a greater number of aquaporins with diverse substrates and functions to adapt to ever-changing environmental and internal stimuli for growth and development. Although aquaporins were initially identified as channels that allow water molecules to cross biological membranes, progress has been made in identifying various novel permeable substrates. Many studies have characterized the versatile physiological and biophysical functions of plant aquaporins. Here, we review the recent reports that highlight aquaporin-facilitated regulation of major physiological processes and stress tolerance throughout plant life cycles as well as the potential prospects and possibilities of applying aquaporins to improve agricultural productivity, food quality, environmental protection, and ecological conservation.

Rice and wheat provide nearly 40% of human calorie and protein requirements. They share a common ancestor and belong to the Poaceae (grass) family. Characterizing their genetic homology is crucial for developing new cultivars with enhanced traits. Several wheat genes and gene families have been characterized based on their rice orthologs. Rice-wheat orthology can identify genetic regions that regulate similar traits in both crops. Rice-wheat comparative genomics can identify candidate wheat genes in a genomic region identified by association or QTL mapping, deduce their putative functions and biochemical pathways, and develop molecular markers for marker-assisted breeding. A knowledge of gene homology facilitates the transfer between crops of genes or genomic regions associated with desirable traits by genetic engineering, gene editing, or wide crossing.

The continued expansion of the world population, increasingly inconsistent climate and shrinking agricultural resources present major challenges to crop breeding. Fortunately, the increasing ability to discover and manipulate genes creates new opportunities to develop more productive and resilient cultivars. Many genes have been described in papers as being beneficial for yield increase. However, few of them have been translated into increased yield on farms. In contrast, commercial breeders are facing gene decidophobia, i.e., puzzled about which gene to choose for breeding among the many identified, a huge chasm between gene discovery and cultivar innovation. The purpose of this paper is to draw attention to the shortfalls in current gene discovery research and to emphasise the need to align with cultivar innovation. The methodology dictates that genetic studies not only focus on gene discovery but also pay good attention to the genetic backgrounds, experimental validation in relevant environments, appropriate crop management, and data reusability. The close of the gaps should accelerate the application of molecular study in breeding and contribute to future global food security.

Maize plant architecture influences planting density and, in turn, grain yield. Most of the plant architecture-related traits can be described as organ size. We describe a miniature maize mutant, Tiny plant 4 (Tip4), which exhibits reduced size of multiple organs and exhibits a semi-dominant monofactorial inheritance characteristic. Positional cloning confirmed that a 4-bp deletion in the NAC TF with transmembrane motif 1-Like (NTL) gene ZmNTL2, denoted as ZmNTL2^Δ, confers the Tip4 mutation. qRT-PCR showed that ZmNTL2 was expressed in all tested tissues. ZmNTL2 functions as a transcriptional activator and is located in both the nucleus and biomembranes. The mutation does not affect the mRNA abundance of ZmNTL2 locus, but it does result in the loss of transmembrane domain and confines the ZmNTL2^Δ protein to the nucleus. Knocking out ZmNTL2 has no effect on maize organ size development, indicating that the 4-bp deletion might be a gain-of-function mutation in organ size regulation. Combining transcriptome sequencing with cytokinin and auxin content determination suggests that the decreased organ size may be possibly mediated by changes in hormone homeostasis.

Seed plumules comprise multiple developing tissues and are key sites for above-ground plant organ morphogenesis. Here, the spatial expression of genes in developing rice seed plumules was characterized by single-cell transcriptome sequencing in Zhongjiazao 17, a popular Chinese indica rice cultivar. Of 15 cell clusters, 13 were assigned to cell types using marker genes and cluster-specific genes. Marker genes of multiple cell types were expressed in several clusters, suggesting a complex developmental system. Some genes for signaling by phytohormones such as abscisic acid were highly expressed in specific clusters. Various cis-elements in the promoters of genes specifically expressed in cell clusters were calculated, and some key hormone-related motifs were frequent in certain clusters. Spatial expression patterns of genes involved in rapid seed germination, seedling growth, and development were identified. These findings enhanced our understanding of cellular diversity and specialization within plumules of rice, a monocotyledonous model crop.

Florets are the basic structural units of spikelets, and their morphogenesis determines the yield and quality of rice grains. However, whether and how pseudouridine-5′-phosphate glycosidase participates in rice spikelet development remains an open question. In this study, we identified a novel gene, OsPPG, which encodes a peroxisome-localized pseudouridine-5′-phosphate glycosidase and regulates the development of rice spikelets. osppg mutants exhibited abnormal sterile lemma, lemma, palea, lodicule, stamens, and pistils; male sterility; shorter panicles; and reduced plant height. OsPPG was found to regulate several OsMADS genes, thereby affecting the morphogenesis of rice spikelets. Furthermore, metabolomics revealed that the OsPPG gene was involved in the decomposition of pseudouridine via the pyrimidine metabolism pathway and may affect the jasmonic acid signaling pathway. These results suggest that OsPPG is a key regulator of rice spikelet development.

Senescence-induced NAC (senNAC) TFs play a crucial role in senescence during the final stage of leaf development. In this study, we identified a rice senNAC, ONAC016, which functions as a positive regulator of leaf senescence. The expression of ONAC016 increased rapidly in rice leaves during the progression of dark-induced and natural senescence. The onac016-1 knockout mutant showed a delayed leaf yellowing phenotype, whereas the overexpression of ONAC016 accelerated leaf senescence. Notably, ONAC016 expression was upregulated by abscisic acid (ABA), and thus detached leaves of the onac016-1 mutant remained green much longer under ABA treatment. Quantitative RT-PCR analysis showed that ONAC016 upregulates the genes associated with chlorophyll degradation, senescence, and ABA signaling. Yeast one-hybrid and dual-luciferase assays revealed that ONAC016 binds directly to the promoter regions of OsNAP, a key gene involved in chlorophyll degradation and ABA-induced senescence. Taken together, these results suggest that ONAC016 plays an important role in promoting leaf senescence through the ABA signaling pathway involving OsNAP.

In a study of DNA methylation changes in melatonin-deficient rice mutants, mutant plants showed premature leaf senescence during grain-filling and reduced grain yield. Melatonin deficiency led to transcriptional reprogramming, especially of genes involved in chlorophyll and carbon metabolism, redox regulation, and transcriptional regulation, during dark-induced leaf senescence. Hypomethylation of mCG and mCHG in the melatonin-deficient rice mutants was associated with the expression change of both protein-coding genes and transposable element-related genes. Changes in gene expression and DNA methylation in the melatonin-deficient mutants were compensated by exogenous application of melatonin. A decreased S-adenosyl-L-methionine level may have contributed to the DNA methylation variations in rice mutants of melatonin deficiency under dark conditions.

In a genome-wide association study, we identified a rice UDP-glycosyltransferase gene, OsUGT706D2, whose transcription was activated in response to cold and submergence stress and to exogenous abscisic acid (ABA). OsUGT706D2 positively regulated the biosynthesis of tricin-4′-O-(syringyl alcohol) ether-7-O-glucoside at both the transcriptional and metabolic levels. OsUGT706D2 mediated cold and submergence tolerance by modulating the expression of stress-responsive genes as well as the abscisic acid (ABA) signaling pathway. Gain of function of OsUGT706D2 increased cold and submergence tolerance and loss of function of OsUGT706D2 reduced cold tolerance. ABA positively regulated OsUGT706D2-mediated cold tolerance but reduced submergence tolerance. These findings suggest the potential use of OsUGT706D2 for improving abiotic stress tolerance in rice.

The cuticular wax, acting as the ultimate defense barrier, is essential for the normal morphogenesis of plant organs. Despite this importance, the connection between wax composition and leaf development has not been thoroughly explored. In this study, we characterized a new maize mutant, ragged leaf4 (rgd4), which exhibits crinkled and ragged leaves starting from the sixth leaf stage. The phenotype of rgd4 is conferred by ZmCER1, which encoding an aldehyde decarbonylase involved in wax biosynthesis. ZmCER1 function deficient mutant displayed reduced cuticular wax density and disordered bulliform cells (BCs), while ZmCER1 overexpressing plants exhibited the opposite effects, indicating that ZmCER1 regulates cuticular wax biosynthesis and BCs development. Additionally, as the density of cuticular wax increased, the water loss rate of detached leaf decreases, suggesting that ZmCER1 is positively correlated with plant drought tolerance.

Drought is a main abiotic stress factor hindering plant growth, development, and crop productivity. Therefore, it is crucial to understand the mechanisms by which plants cope with drought stress. Here, the function of the maize peroxidase gene ZmPRX1 in drought stress tolerance was investigated by measurement of its expression in response to drought treatment both in a ZmPRX1 overexpression line and a mutant line. The higher root lignin accumulation and seedling survival rate of the overexpression line than that of the wild type or mutant support a role for ZmPRX1 in maize drought tolerance by regulating root development and lignification. Additionally, yeast one-hybrid, Dule luciferase and ChIP-qPCR assays showed that ZmPRX1 is negatively regulated by a nuclear-localized ZmWRKY86 transcription factor. The gene could potentially be used for breeding of drought-tolerant cultivars.

Wild soybean (Glycine soja), a relative of cultivated soybean, shows high adaptability to adverse environmental conditions. We identified and characterized a wild soybean transcription factor gene, GsWRKY40, that promotes plant salt stress. GsWRKY40 was highly expressed in wild soybean roots and was up-regulated by salt treatment. GsWRKY40 was localized in nucleus and demonstrated DNA-binding activities but without transcriptional activation. Mutation and overexpression of GsWRKY40 altered salt tolerance of Arabidopsis plants. To understand the molecular mechanism of GsWRKY40 in regulating plant salt resistance, we screened a cDNA library and identified a GsWRKY40 interacting protein GsbHLH92 by using yeast two-hybrid approach. The physical interaction of GsWRKY40 and GsbHLH92 was confirmed by co-immunoprecipitation (co-IP), GST pull-down, and bimolecular fluorescence complementation (BiFC) techniques. Intriguingly, co-overexpression of GsWRKY40 and GsbHLH92 resulted in higher salt tolerance and lower ROS levels than overexpression of GsWRKY40 or GsbHLH92 in composite soybean plants, suggesting that GsWRKY40 and GsbHLH92 may synergistically regulate plant salt resistance through inhibiting ROS production. qRT-PCR data indicated that the expression level of GmSPOD1 gene encoding peroxidase was cooperatively regulated by GsWRKY40 and GsbHLH92, which was confirmed by using a dual luciferase report system and yeast one-hybrid experiment. Our study reveals a pathway that GsWRKY40 and GsbHLH92 collaboratively up-regulate plant salt resistance through impeding GmSPOD1 expression and reducing ROS levels, providing a novel perspective on the regulatory mechanisms underlying plant tolerance to abiotic stresses.

Plant anatomy is patterned early during leaf development which suggests studying the spatial-temporal transcriptomes of primordia will help identify critical regulative and functional genes. We successfully isolated the leaf primordia tissues from the C₃ grass rice and the C₄ grass foxtail millet by laser capture microdissection (LCM) and studied the gene expression throughout leaf developmental stages. Our data analysis uncovered the conserved expression patterns of certain gene clusters both in rice and foxtail millet during leaf development. We revealed genes and transcription factors involved in vein formation, stomatal development, and suberin accumulation. We identified 79 candidate genes associated with functional regulation of C₄ anatomy formation. Screening phenotype of the candidate genes revealed that knock-out of a putative polar auxin transport related gene NAL1 resulted significantly reduced veinal space in rice leaf. Our present work provides a foundation for future analyses of genes with novel functions in grasses and their role in leaf development, in particular the role in leaves with a contrasting C₃ vs. C₄ biosynthetic pathway.

Alfalfa (Medicago sativa. L.) is a globally significant autotetraploid legume forage crop. However, despite its importance, establishing efficient gene editing systems for cultivated alfalfa remains a formidable challenge. In this study, we pioneered the development of a highly effective ultrasonic-assisted leaf disc transformation system for Gongnong 1 alfalfa, a variety widely cultivated in Northeast China. Subsequently, we created a single transcript CRISPR/Cas9 (CRISPR_2.0) toolkit, incorporating multiplex gRNAs, designed for gene editing in Gongnong 1. Both Cas9 and gRNA scaffolds were under the control of the Arabidopsis ubiquitin-10 promoter, a widely employed polymerase II constitutive promoter known for strong transgene expression in dicots. To assess the toolkit’s efficiency, we targeted PALM1, a gene associated with a recognizable multifoliate phenotype. Utilizing the CRISPR_2.0 toolkit, we directed PALM1 editing at two sites in the wild-type Gongnong 1. Results indicated a 35.1% occurrence of editing events all in target 2 alleles, while no mutations were detected at target 1 in the transgenic-positive lines. To explore more efficient sgRNAs, we developed a rapid, reliable screening system based on Agrobacterium rhizogenes-mediated hairy root transformation, incorporating the visible reporter MtLAP1. This screening system demonstrated that most purple visible hairy roots underwent gene editing. Notably, sgRNA3, with an 83.0% editing efficiency, was selected using the visible hairy root system. As anticipated, tetra-allelic homozygous palm1 mutations exhibited a clear multifoliate phenotype. These palm1 lines demonstrated an average crude protein yield increase of 21.5% compared to trifoliolate alfalfa. Our findings highlight the modified CRISPR_2.0 system as a highly efficient and robust gene editing tool for autotetraploid alfalfa.

Grain size and weight are closely related traits determining yield in rice (Oryza sativa L.). Since indica and japonica rice varieties differ significantly in multiple traits, a high-generation recombinant inbred line (RIL) population derived from the crossing LH9 (indica) and RPY (japonica) was used to map grain-related traits in six environments. Pyramiding of the quantitative trait loci (QTL) for thousand-grain weight showed that combinations of multiple QTL significantly increased the phenotypic effect. A novel gene named GSW3.1 controlling grain size and weight was discovered using the major QTL for the co-localization of grain width and thousand-grain weight on chromosome 3. Gene editing revealed that GSW3.1 (LOC_Os03g16850) was pleiotropic, positively regulating grain size and weight while affecting several other agronomic traits. Haplotype analysis indicated that some traits, including grain width and weight, were highly correlated with indica-japonica differentiation.

Genome-wide association mapping studies (GWAS) based on Big Data are a potential approach to improve marker-assisted selection in plant breeding. The number of available phenotypic and genomic data sets in which medium-sized populations of several hundred individuals have been studied is rapidly increasing. Combining these data and using them in GWAS could increase both the power of QTL discovery and the accuracy of estimation of underlying genetic effects, but is hindered by data heterogeneity and lack of interoperability. In this study, we used genomic and phenotypic data sets, focusing on Central European winter wheat populations evaluated for heading date. We explored strategies for integrating these data and subsequently the resulting potential for GWAS. Establishing interoperability between data sets was greatly aided by some overlapping genotypes and a linear relationship between the different phenotyping protocols, resulting in high quality integrated phenotypic data. In this context, genomic prediction proved to be a suitable tool to study relevance of interactions between genotypes and experimental series, which was low in our case. Contrary to expectations, fewer associations between markers and traits were found in the larger combined data than in the individual experimental series. However, the predictive power based on the marker-trait associations of the integrated data set was higher across data sets. Therefore, the results show that the integration of medium-sized to Big Data is an approach to increase the power to detect QTL in GWAS. The results encourage further efforts to standardize and share data in the plant breeding community.

Lesion mimic often exhibits leaf disease-like symptoms even in the absence of pathogen infection, and is characterized by a hypersensitive-response (HR) that closely linked to plant disease resistance. Despite this, only a few lesion mimic genes have been identified in wheat. In this investigation, a lesion mimic wheat mutant named je0297 was discovered, showing no alteration in yield components when compared to the wild type (WT). Segregation ratio analysis of the F₂ individuals resulting from the cross between the WT and the mutant revealed that the lesion mimic was governed by a single recessive gene in je0297. Using Bulked segregant analysis (BSA) and exome capture sequencing, we mapped the lesion mimic gene designated as lm6 to chromosome 6BL. Further gene fine mapping using 3315 F₂ individuals delimited the lm6 within a 1.18 Mb region. Within this region, we identified 16 high-confidence genes, with only two displaying mutations in je0297. Notably, one of the two genes, responsible for encoding flavonol synthase, exhibited altered expression levels. Subsequent phenotype analysis of TILLING mutants confirmed that the gene encoding flavonol synthase was indeed the causal gene for lm6. Transcriptome sequencing analysis revealed that the DEGs between the WT and mutant were significantly enriched in KEGG pathways related to flavonoid biosynthesis, including flavone and flavonol biosynthesis, isoflavonoid biosynthesis, and flavonoid biosynthesis pathways. Furthermore, more than 30 pathogen infection-related (PR) genes exhibited upregulation in the mutant. Corresponding to this expression pattern, the flavonoid content in je0297 showed a significant decrease in the 4^th leaf, accompanied by a notable accumulation of reactive oxygen, which likely contributed to the development of lesion mimic in the mutant. This investigation enhances our comprehension of cell death signaling pathways and provides a valuable gene resource for the breeding of disease-resistant wheat.

Stripe rust, caused by Puccinia striiformis f. sp. tritici (Pst), is a devastating disease in wheat worldwide. Discovering and characterizing new resistance genes/QTL is crucial for wheat breeding programs. In this study, we fine-mapped and characterized a stripe rust resistance gene, YRAYH, on chromosome arm 5BL in the Chinese wheat landrace Anyuehong (AYH). Evaluations of stripe rust response to prevalent Chinese Pst races in near-isogenic lines derived from a cross of Anyuehong and Taichung 29 showed that YrAYH conferred a high level of resistance at all growth stages. Fine mapping using a large segregating population of 9748 plants, narrowed the YRAYH locus to a 3.7 Mb interval on chromosome arm 5BL that included 61 annotated genes. Transcriptome analysis of two NIL pairs identified 64 upregulated differentially expressed genes (DEGs) in the resistant NILs (NILs-R). Annotations indicated that many of these genes have roles in plant disease resistance pathways. Through a combined approach of fine-mapping and transcriptome sequencing, we identified a serine/threonine-protein kinase SRPK as a candidate gene underlying YrAYH. A unique 25 bp insertion was identified in the NILs-R compared to the NILs-S and previously published wheat genomes. An InDel marker was developed and co-segregated with YrAYH. Agronomic trait evaluation of the NILs suggested that YrAYH not only reduces the impact of stripe rust but was also associated with a gene that increases plant height and spike length.

Maize seedling blight caused by Fusarium verticillioides is a widely occurring maize disease, but the genetics and mechanisms of resistance are not well understood. In this study, GWAS performed by MLM and 3VmrMLM identified 40 and 20 QTNs, associated with seedling blight resistance. These methods identified 49 and 36 genes, respectively. Functional verification of candidate gene ZmSBR1 identified by both methods showed that the resistance of a mutant line to seedling blight decreased by 0.37 grade points after inoculation with F. verticillioides, compared with the WT. The length of the stem rot lesion caused by F. verticillioides increased by 86% in mutant seedlings, and the relative length of the adult plant stalk rot increased by 35% in mutant plants compared to the wild type after inoculation with Fusarium graminearum. Transcriptome analysis showed that expression of defense-related genes after inoculation was down-regulated in the mutant compared to the wild type, synthesis of secondary metabolites associated with resistance was reduced, and the immune response triggered by PAMP decreased, resulting in decreased resistance of mutant maize seedlings. Candidate gene association analysis showed that most maize inbred lines carried the susceptible haplotype. A functional PCR marker was developed. The results demonstrated that ZmSBR1 conferred resistance to multiple Fusarium diseases at the seedling and adult growth stages and had important application value in breeding.

Flowering time is important for adaptation of soybean (Glycine max) to different environments. Here, we conducted a genome-wide association study of flowering time using a panel of 1490 cultivated soybean accessions. We identified three strong signals at the qFT02-2 locus (Chr02: 12037319-12238569), which were associated with flowering time in three environments: Gongzhuling, Mengcheng, and Nanchang. By analyzing linkage disequilibrium, gene expression patterns, gene annotation, and the diversity of variants, we identified an AP1 homolog as the candidate gene for the qFT02-2 locus, which we named GmAP1d. Only one nonsynonymous polymorphism existed among 1490 soybean accessions at position Chr02:12087053. Accessions carrying the Chr02:12087053-T allele flowered significantly earlier than those carrying the Chr02:12087053-A allele. Thus, we developed a cleaved amplified polymorphic sequence (CAPS) marker for the SNP at Chr02:12087053, which is suitable for marker-assisted breeding of flowering time. Knockout of GmAP1d in the ‘Williams 82’ background by gene editing promoted flowering under long-day conditions, confirming that GmAP1d is the causal gene for qFT02-2. An analysis of the region surrounding GmAP1d revealed that GmAP1d was artificially selected during the genetic improvement of soybean. Through stepwise selection, the proportion of modern cultivars carrying the Chr02:12087053-T allele has increased, and this allele has become nearly fixed (95%) in northern China. These findings provide a theoretical basis for better understanding the molecular regulatory mechanism of flowering time in soybean and a target gene that can be used for breeding modern soybean cultivars adapted to different latitudes.

Ethylene plays essential roles in plant growth, development and stress responses. The ethylene signaling pathway and molecular mechanism have been studied extensively in Arabidopsis and rice but limited in peanuts. Here, we established a sand-culture method to screen pingyangmycin mutagenized peanut lines based on their specific response to ethylene (“triple response“). An ethylene-insensitive mutant, inhibition of peanut hypocotyl elongation 1 (iph1), was identified that showed reduced sensitivity to ethylene in both hypocotyl elongation and root growth. Through bulked segregant analysis sequencing, a major gene related to iph1, named AhIPH1, was preliminarily mapped at the chromosome Arahy.01, and further narrowed to a 450-kb genomic region through substitution mapping strategy. A total of 7014 genes were differentially expressed among the ACC treatment through RNA-seq analysis, of which only the Arahy.5BLU0Q gene in the candidate mapping interval was differentially expressed between WT and mutant iph1. Integrating sequence variations, functional annotation and transcriptome analysis revealed that a predicated gene, Arahy.5BLU0Q, encoding SNF1 protein kinase, may be the candidate gene for AhIPH1. This gene contained two single-nucleotide polymorphisms at promoter region and was more highly expressed in iph1 than WT. Our findings reveal a novel ethylene-responsive gene, which provides a theoretical foundation and new genetic resources for the mechanism of ethylene signaling in peanuts.

Cotton fiber is one of the main raw materials for the textile industry. In recent years, many cotton fiber quality QTL have been identified, but few were applied in breeding. In this study, a genome wide association study (GWAS) of fiber-quality traits in 265 upland cotton breeding intermediate lines (GhBreeding), combined with genome-wide selective sweep analysis (GSSA) and genomic selection (GS), revealed 25 QTL. Most of these QTL were ignored by only using GWAS. The CRISPR/Cas9 mutants of GhMYB_D13 had shorter fiber, which indicates the credibility of QTL to a certain extent. Then these QTL were verified in other cotton natural populations, 5 stable QTL were found having broad potential for application in breeding. Additionally, among these 5 stable QTL, superior genotypes of 4 showed an enrichment in most improved new varieties widely cultivated currently. These findings provide insights for how to identify more QTL through combined multiple genomic analysis to apply in breeding.

A two-year field experiment conducted under dryland conditions in semi-humid and drought-prone regions of China aimed to assess the effect of ammonia-oxidizing bacterial on maize water use efficiency and yield. A heterotrophic ammonia-oxidizing bacteria (HAOB) strain S2_8_1 was used. Six treatments were applied: (1) no irrigation + HAOB strain (DI), (2) no irrigation + blank culture medium (DM), (3) no irrigation control (DCK), (4) irrigation + HAOB (WI), (5) irrigation + blank culture medium (WM), and (6) irrigation control (WCK). Results revealed that HAOB treatment increased maize growth, yield, and water use efficiency over controls, regardless of whether the year was wet or dry. This improvement was attributed to the accelerated nitrification in the rhizosphere soil due to HAOB inoculation, which subsequently led to increased levels of leaf cytokinins. Overall, these findings suggest that HAOB inoculation holds promise as a strategy to boost water use efficiency and maize productivity in dryland agriculture.

In aquaculture, co-culturing rice with fish may mitigate greenhouse-gas emissions. In this study, co-culture of four rice cultivars in a laboratory-scale rice-fish system reduced CH₄ and N₂O emissions relative to fish monoculture. Differences in CH₄ and N₂O emissions among rice cultivars primarily stem from the differential effects of rice plants on plant-mediated CH₄ transport, CH₄ oxidation and nitrogen absorption.

In a study comparing grain filling and yield in a large- and a small-grain-size wheat cultivar under two planting patterns and two irrigation regimes, plastic-covered ridge and furrow planting with sprinkler irrigation increased grain filling and yield in both cultivars. The largest contributors to grain yield were an extended active grain-filling period in Shuangda 1 and an increased mean grain-filling rate in XN538.

Winter wheat-summer maize cropping system in the North China Plain often experiences drought-induced yield reduction in the wheat season and rainwater and nitrogen (N) fertilizer losses in the maize season. This study aimed to identify an optimal interseasonal water- and N-management strategy to alleviate these losses. Four ratios of allocation of 360 kg N ha⁻¹ between the wheat and maize seasons under one-time presowing root-zone irrigation (W0) and additional jointing and anthesis irrigation (W2) in wheat and one irrigation after maize sowing were set as follows: N1 (120:240), N2 (180:180), N3 (240:120) and N4 (300:60). The results showed that under W0, the N3 treatment produced the highest annual yield, crop water productivity (WP_C), and nitrogen partial factor productivity (PFPN). Increased N allocation in wheat under W0 improved wheat yield without affecting maize yield, as surplus nitrate after wheat harvest was retained in the topsoil layers and available for the subsequent maize. Under W2, annual yield was largest in the N2 treatment. The risk of nitrate leaching increased in W2 when N application rate in wheat exceeded that of the N2 treatment, especially in the wet year. Compared to W2N2, the W0N3 maintained 95.2% grain yield over two years. The WP_C was higher in the W0 treatment than in the W2 treatment. Therefore, following limited total N rate, an appropriate fertilizer N transfer from maize to wheat season had the potential of a “triple win” for high annual yield, WP_C and PFPN in a water-limited wheat-maize cropping system.

This study investigated the effect of magnesium application on peanut growth and yield under two nitrogen (N) application rates in acidic soil in southern China. The chlorophyll content, net photosynthetic rate and dry matter accumulation of the N-sensitive cultivar decreased under reduced N treatments, whereas no effect was observed on the relevant indicators in the N-insensitive variety GH1026. Mg application increased the net photosynthetic rate by increasing the expression of genes involved in chlorophyll synthesis and Rubisco activity in the leaves during the pegging stage under 50%N treatment, while no effect on the net photosynthetic rate was observed under the 100%N treatment. The rate of dry matter accumulation at the early growth stage, total dry matter accumulation and pod yield at harvest increased after Mg application under 50%N treatment by increasing the transportation of assimilates from stems and leaves to pods in both peanut varieties, whereas no effect was found under 100%N treatment. Moreover, Mg application increased the NUE under 50%N treatment. No improvement of NUE in either peanut variety was found under 100%N treatment, while Mg application under the 50%N treatment can obtain a higher economic benefit than the 100%N treatment. In acidic soil, application of 307.5 kg ha⁻¹ of Mg sulfate fertilizer under 50% reduced nitrogen application is a suitable fertilizer management measure for improving carbon assimilation, NUE and achieve high peanut yields in southern China.

The contribution of spike photosynthesis to grain yield (GY) has been overlooked in the accurate spectral prediction of yield. Thus, it’s essential to construct and estimate a yield-related phenotypic trait considering spike photosynthesis. Based on field and spectral reflectance data from 19 wheat cultivars under two nitrogen fertilization conditions in two years, our objectives were to (i) construct a yield-related phenotypic trait (spike-leaf composite indicator, SLI) accounting for the contribution of the spike to photosynthesis, (ii) develop a novel spectral index (enhanced triangle vegetation index, ETVI3) sensitive to SLI, and (iii) establish and evaluate SLI estimation models by integrating spectral indices and machine learning algorithms. The results showed that SLI was sensitive to nitrogen fertilizer and wheat cultivar variation as well as a better predictor of yield than the leaf area index. ETVI3 maintained a strong correlation with SLI throughout the growth stage, whereas the correlations of other spectral indices with SLI were poor after spike emergence. Integrating spectral indices and machine learning algorithms improved the estimation accuracy of SLI, with the most accurate estimates of SLI showing coefficient of determination, root mean square error (RMSE), and relative RMSE values of 0.71, 0.047, and 26.93%, respectively. These results provide new insights into the role of fruiting organs for the accurate spectral prediction of GY. This high-throughput SLI estimation approach can be applied for wheat yield prediction at whole growth stages and may be assisted with agronomical practices and variety selection.

Anther dehiscence controls optimal interaction between pollen and stigma, thereby determining the successful sexual reproduction. The regulators or mechanisms of this process remain elusive. Here, two CRISPR/Cas9 mutants of a rice exocyst subunit gene SEC3A, sec3a-1 and sec3a-2, showed anther indehiscence at anthesis and male sterility at maturity. Pollen viability and germination in the mutants were partly defective, whereas their female gametes undergone a normal development. Hybrid or self-pollinated seeds could be produced by artificial pollination, suggesting potential use of a weak sec3a mutant as a female line during hybrid breeding. SEC3A is widely expressed in various tissues, including anther walls. Further results showed an excessive IAA accumulation and no endothecium lignification in sec3a-1/2 anthers. Our findings suggest that SEC3A appears to regulate anther dehiscence by modulating auxin signaling, providing insights into regulation of anther dehiscence and function of exocyst in plants.

Soybean (Glycine max) is a short-day crop whose flowering time is regulated by photoperiod. The long-juvenile trait extends its vegetative phase and increases yield under short-day conditions. Natural variation in J, the major locus controlling this trait, modulates flowering time. We report that the three J-family genes influence soybean flowering time, with the triple mutant Guangzhou Mammoth-2 flowering late under short days by inhibiting transcription of E1-family genes. J-family genes offer promising allelic combinations for breeding.